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Tutorial: Using VMD for visualizing proteins

Tutorial: Using VMD for visualizing proteins

The short PHY542: VMD Tutorial provides a short introduction to basic use of the VMD (“Visual Molecular Dynamics”) software to visualize and analyze proteins and molecular dynamics trajectories.

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Summer Book Club 2014: Molecular Simulations and Theory

Summer Book Club 2014: Molecular Simulations and Theory

This summer’s Lab Book Club is designed to provide a thorough review of fundamental concepts for understanding biomolecular simulation and, in particular,molecular dynamics simulations (MD). The material is primarily based on chapters from Statistical Mechanics: Theory and Molecular Simulation by Mark Tuckerman.

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Tutorial: MDAnalysis

Tutorial: MDAnalysis

A short introductory tutorial on MDAnalysis

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