.. -*- coding: utf-8 -*-

===================
 Ramachandran Plot
===================

To see where each residue lies in the `Ramachandran Plot`_ use the
built in **Ramachandran Plot tool**:

* load the structure

* :menuselection:`Extras --> Analysis --> Ramachandran Plot`

  * :guilabel:`Molecule`: *0* (or select your molecule)
  * :guilabel:`Selection`: *protein*

.. figure:: /images/ramaplot_vmd.*

   Ramachandran plot of AdK in the open conformation (4AKE), as
   produced by the VMD *Ramachandran Plot* plugin.

.. _Ramachandran Plot: https://en.wikipedia.org/wiki/Ramachandran_plot