Ramachandran Plot

To see where each residue lies in the Ramachandran Plot use the built in Ramachandran Plot tool:

  • load the structure
  • Extras ‣ Analysis ‣ Ramachandran Plot
    • Molecule: 0 (or select your molecule)
    • Selection: protein
../_images/ramaplot_vmd.png

Ramachandran plot of AdK in the open conformation (4AKE), as produced by the VMD Ramachandran Plot plugin.